I honestly don't see how it could be thrown out of alignment. I was planning on getting an aligment soon anyways I have new shocks/struts to install.
The dog-bone mount would have kept everything inline and seemed to do so when I jacked it back up to put all the bolts back in. I was able to get the LCA bolts to go through the subframe no problem.

And, other then unbolting the LCA's from the subframe, I never unbolted anything else suspension wise.
I'm not trying to seem like a smarta** or anything. It's just this was the first time I have actually messed with the subframe of the SVT. I'm not discrediting anything you all are saying either. Guess I'm trying to say that I appreciate your time to reply with your concerns/thoughts.

Just letting everyone know what I had experienced when swapping it out.